Publications 2016


1.  Zito, F. and Alric, J. (2016), Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling; Advances in Photosynthesis and Respiration. Springer, Dordrecht, pp. 295-306.

2.  Zambolin, S., Clantin, B., Chami, M., Hoos, S., Haouz, A., Villeret, V. and Delepelaire, P. (2016) Structural basis for haem piracy from host haemopexin by Haemophilus influenzae. Nat Commun, 7, 11590. http://www.ncbi.nlm.nih.gov/pubmed/27188378

3.  Zaffagnini, M., De Mia, M., Morisse, S., Di Giacinto, N., Marchand, C.H., Maes, A., Lemaire, S.D. and Trost, P. (2016) Protein S-nitrosylation in photosynthetic organisms: A comprehensive overview with future perspectives. Biochimica Et Biophysica Acta-Proteins and Proteomics, 1864, 952-966.

4.  Wollman, F.A. (2016) An antimicrobial origin of transit peptides accounts for early endosymbiotic events. Traffic, 17, 1322-1328. http://www.ncbi.nlm.nih.gov/pubmed/27620857

5.  Warnet, X.L., Laadhari, M., Arnold, A.A., Marcotte, I. and Warschawski, D.E. (2016) A (2)H magic-angle spinning solid-state NMR characterisation of lipid membranes in intact bacteria. Biochim Biophys Acta, 1858, 146-152. http://www.ncbi.nlm.nih.gov/pubmed/26518520

6.  Vermeglio, A., Lavergne, J. and Rappaport, F. (2016) Connectivity of the intracytoplasmic membrane of Rhodobacter sphaeroides: a functional approach. Photosynth Res, 127, 13-24. http://www.ncbi.nlm.nih.gov/pubmed/25512104

7.  Tran, T.T., Nguyen, P.H. and Derreumaux, P. (2016) Lattice model for amyloid peptides: OPEP force field parametrization and applications to the nucleus size of Alzheimer's peptides. J Chem Phys, 144, 205103. http://www.ncbi.nlm.nih.gov/pubmed/27250331

8.  Tourasse, N.J., Barbi, T., Waterhouse, J.C., Shtaida, N., Leu, S., Boussiba, S., Purton, S. and Vallon, O. (2016) The complete sequence of the chloroplast genome of the green microalga Lobosphaera (Parietochloris) incisa. Mitochondrial DNA A DNA Mapp Seq Anal, 27, 2073-2075. http://www.ncbi.nlm.nih.gov/pubmed/25423517

9.  Takahashi, H., Schmollinger, S., Lee, J.H., Schroda, M., Rappaport, F., Wollman, F.A. and Vallon, O. (2016) PETO Interacts with Other Effectors of Cyclic Electron Flow in Chlamydomonas. Mol Plant, 9, 558-568. http://www.ncbi.nlm.nih.gov/pubmed/26768121

10.  Stadlbauer, P., Mazzanti, L., Cragnolini, T., Wales, D.J., Derreumaux, P., Pasquali, S. and Sponer, J. (2016) Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes. J Chem Theory Comput, 12, 6077-6097. http://www.ncbi.nlm.nih.gov/pubmed/27767303

11. Ruiz-Larrabeiti, O., Plagaro, A.H., Gracia, C., Sevillano, E., Gallego, L., Hajnsdorf, E. and Kaberdin, V.R. (2016) A new custom microarray for sRNA profiling in Escherichia coli. FEMS Microbiol Lett, 363. http://www.ncbi.nlm.nih.gov/pubmed/27190161

12.  Porcher, J.P., Fogeron, T., Gomez-Mingot, M., Chamoreau, L.M., Li, Y. and Fontecave, M. (2016) Synthesis and Reactivity of a Bio-inspired Dithiolene Ligand and its Mo Oxo Complex. Chemistry, 22, 4447-4453. http://www.ncbi.nlm.nih.gov/pubmed/26880579

13.  Pérez-Pérez, M.E., Lemaire, S.D. and Crespo, J.L. (2016) Control of Autophagy in Chlamydomonas Is Mediated through Redox-Dependent Inactivation of the ATG4 Protease. Plant Physiol, 172, 2219-2234. http://www.ncbi.nlm.nih.gov/pubmed/27756818

14.  Nilsson, H., Cournac, L., Rappaport, F., Messinger, J. and Lavergne, J. (2016) Estimation of the driving force for dioxygen formation in photosynthesis. Biochim Biophys Acta, 1857, 23-33. http://www.ncbi.nlm.nih.gov/pubmed/26435390

15.  Nguyen, P.H., Sterpone, F., Pouplana, R., Derreumaux, P. and Campanera, J.M. (2016) Dimerization Mechanism of Alzheimer Abeta40 Peptides: The High Content of Intrapeptide-Stabilized Conformations in A2V and A2T Heterozygous Dimers Retards Amyloid Fibril Formation. J Phys Chem B, 120, 12111-12126. http://www.ncbi.nlm.nih.gov/pubmed/27933940

16.  Nguyen, P.H., Sterpone, F., Campanera, J.M., Nasica-Labouze, J. and Derreumaux, P. (2016) Impact of the A2V Mutation on the Heterozygous and Homozygous Abeta1-40 Dimer Structures from Atomistic Simulations. ACS Chem Neurosci, 7, 823-832. http://www.ncbi.nlm.nih.gov/pubmed/27007027

17.  Nawrocki, W.J., Santabarbara, S., Mosebach, L., Wollman, F.A. and Rappaport, F. (2016) State transitions redistribute rather than dissipate energy between the two photosystems in Chlamydomonas. Nat Plants, 2, 16031. http://www.ncbi.nlm.nih.gov/pubmed/27249564

18.  Mazur, A.K. (2016) Homologous Pairing between Long DNA Double Helices. Phys Rev Lett, 116, 158101. http://www.ncbi.nlm.nih.gov/pubmed/27127987

19.  Malinge, J., Mousseau, F., Zanchi, D., Brun, G., Tribet, C. and Marie, E. (2016) Tailored stimuli-responsive interaction between particles adjusted by straightforward adsorption of mixed layers of Poly(lysine)-g-PEG and Poly(lysine)-g-PNIPAM on anionic beads. J Colloid Interface Sci, 461, 50-55. http://www.ncbi.nlm.nih.gov/pubmed/26397909

20.  Longatte, G., Rappaport, F., Wollman, F.A., Guille-Collignon, M. and Lemaitre, F. (2016) Mechanism and analyses for extracting photosynthetic electrons using exogenous quinones - what makes a good extraction pathway? Photochem Photobiol Sci, 15, 969-979. http://www.ncbi.nlm.nih.gov/pubmed/27411477

21.  Laurent, B., Murail, S., Shahsavar, A., Sauguet, L., Delarue, M. and Baaden, M. (2016) Sites of Anesthetic Inhibitory Action on a Cationic Ligand-Gated Ion Channel. Structure, 24, 595-605. http://www.ncbi.nlm.nih.gov/pubmed/27021161

22.  Katava, M., Kalimeri, M., Stirnemann, G. and Sterpone, F. (2016) Stability and Function at High Temperature. What Makes a Thermophilic GTPase Different from Its Mesophilic Homologue. J Phys Chem B, 120, 2721-2730. http://www.ncbi.nlm.nih.gov/pubmed/26907829

23.  Ismail, A., Leroux, V., Smadja, M., Gonzalez, L., Lombard, M., Pierrel, F., Mellot-Draznieks, C. and Fontecave, M. (2016) Coenzyme Q Biosynthesis: Evidence for a Substrate Access Channel in the FAD-Dependent Monooxygenase Coq6. PLOS Computational Biology, 12, e1004690. https://doi.org/10.1371/journal.pcbi.1004690

24.  Huan, T.N., Simon, P., Benayad, A., Guetaz, L., Artero, V. and Fontecave, M. (2016) Cu/Cu2 O Electrodes and CO2 Reduction to Formic Acid: Effects of Organic Additives on Surface Morphology and Activity. Chemistry, 22, 14029-14035. http://www.ncbi.nlm.nih.gov/pubmed/27516360

25.  Huan, T.N., Prakash, P., Simon, P., Rousse, G., Xu, X., Artero, V., Gravel, E., Doris, E. and Fontecave, M. (2016) CO2 Reduction to CO in Water: Carbon Nanotube-Gold Nanohybrid as a Selective and Efficient Electrocatalyst. ChemSusChem, 9, 2317-2320. http://www.ncbi.nlm.nih.gov/pubmed/27492905

26.  Hamdane, D., Velours, C., Cornu, D., Nicaise, M., Lombard, M. and Fontecave, M. (2016) A chemical chaperone induces inhomogeneous conformational changes in flexible proteins. Phys Chem Chem Phys, 18, 20410-20421. http://www.ncbi.nlm.nih.gov/pubmed/27401114

27.  Hamdane, D., Grosjean, H. and Fontecave, M. (2016) Flavin-Dependent Methylation of RNAs: Complex Chemistry for a Simple Modification. J Mol Biol, 428, 4867-4881. http://www.ncbi.nlm.nih.gov/pubmed/27825927

28.  Gütle, D.D., Roret, T., Muller, S.J., Couturier, J., Lemaire, S.D., Hecker, A., Dhalleine, T., Buchanan, B.B., Reski, R., Einsle, O. et al. (2016) Chloroplast FBPase and SBPase are thioredoxin-linked enzymes with similar architecture but different evolutionary histories. Proc Natl Acad Sci U S A, 113, 6779-6784. http://www.ncbi.nlm.nih.gov/pubmed/27226308

29.  Goudy, V., Maynadié, J., Goff, X.L., Meyer, D. and Fontecave, M. (2016) Synthesis, electrochemical and spectroscopic properties of ruthenium(ii) complexes containing 2,6-di(1H-imidazo[4,5-f][1,10]phenanthrolin-2-yl)aryl ligands. New Journal of Chemistry, 40, 1704-1714. http://dx.doi.org/10.1039/C5NJ02280K

30.  Frka-Petesic, B., Zanchi, D., Martin, N., Carayon, S., Huille, S. and Tribet, C. (2016) Aggregation of Antibody Drug Conjugates at Room Temperature: SAXS and Light Scattering Evidence for Colloidal Instability of a Specific Subpopulation. Langmuir, 32, 4848-4861. http://www.ncbi.nlm.nih.gov/pubmed/27129612

31.  Fortunato, A.E., Jaubert, M., Enomoto, G., Bouly, J.P., Raniello, R., Thaler, M., Malviya, S., Bernardes, J.S., Rappaport, F., Gentili, B. et al. (2016) Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean. Plant Cell, 28, 616-628. http://www.ncbi.nlm.nih.gov/pubmed/26941092

32.  Fontaine, F., Gasiorowski, E., Gracia, C., Ballouche, M., Caillet, J., Marchais, A. and Hajnsdorf, E. (2016) The small RNA SraG participates in PNPase homeostasis. RNA, 22, 1560-1573. http://www.ncbi.nlm.nih.gov/pubmed/27495318

33.  Fogeron, T., Porcher, J.P., Gomez-Mingot, M., Todorova, T.K., Chamoreau, L.M., Mellot-Draznieks, C., Li, Y. and Fontecave, M. (2016) A cobalt complex with a bioinspired molybdopterin-like ligand: a catalyst for hydrogen evolution. Dalton Trans, 45, 14754-14763. http://www.ncbi.nlm.nih.gov/pubmed/27426738

34.  DiChiara, J.M., Liu, B., Figaro, S., Condon, C. and Bechhofer, D.H. (2016) Mapping of internal monophosphate 5' ends of Bacillus subtilis messenger RNAs and ribosomal RNAs in wild-type and ribonuclease-mutant strains. Nucleic Acids Res, 44, 3373-3389. http://www.ncbi.nlm.nih.gov/pubmed/26883633

35.  Dalier, F., Eghiaian, F., Scheuring, S., Marie, E. and Tribet, C. (2016) Temperature-Switchable Control of Ligand Display on Adlayers of Mixed Poly(lysine)-g-(PEO) and Poly(lysine)-g-(ligand-modified poly-N-isopropylacrylamide). Biomacromolecules, 17, 1727-1736. http://www.ncbi.nlm.nih.gov/pubmed/27011022

36.  Dahmane, N., Gadelle, D., Delmas, S., Criscuolo, A., Eberhard, S., Desnoues, N., Collin, S., Zhang, H., Pommier, Y., Forterre, P. et al. (2016) topIb, a phylogenetic hallmark gene of Thaumarchaeota encodes a functional eukaryote-like topoisomerase IB. Nucleic Acids Res, 44, 2795-2805. http://www.ncbi.nlm.nih.gov/pubmed/26908651

37.  Chiricotto, M., Tran, T.T., Nguyen, P., Melchionna, S., Sterpone, F. and Derreumaux, P. (2016) Coarse-grained and All-atom Simulations towards the Early and Late Steps of Amyloid Fibril Formation. Isr. J. Chem.

38.  Chiricotto, M., Sterpone, F., Derreumaux, P. and Melchionna, S. (2016) Multiscale simulation of molecular processes in cellular environments. Philos Trans A Math Phys Eng Sci, 374. http://www.ncbi.nlm.nih.gov/pubmed/27698046

39.  Chiricotto, M., Melchionna, S., Derreumaux, P. and Sterpone, F. (2016) Hydrodynamic effects on beta-amyloid (16-22) peptide aggregation. J Chem Phys, 145, 035102. http://www.ncbi.nlm.nih.gov/pubmed/27448906

40.  Casiraghi, M., Damian, M., Lescop, E., Point, E., Moncoq, K., Morellet, N., Levy, D., Marie, J., Guittet, E., Baneres, J.L. et al. (2016) Functional Modulation of a G Protein-Coupled Receptor Conformational Landscape in a Lipid Bilayer. J Am Chem Soc, 138, 11170-11175. http://www.ncbi.nlm.nih.gov/pubmed/27489943

41.  Caserta, G., Adamska-Venkatesh, A., Pecqueur, L., Atta, M., Artero, V., Roy, S., Reijerse, E., Lubitz, W. and Fontecave, M. (2016) Chemical assembly of multiple metal cofactors: The heterologously expressed multidomain [FeFe]-hydrogenase from Megasphaera elsdenii. Biochim Biophys Acta, 1857, 1734-1740. http://www.ncbi.nlm.nih.gov/pubmed/27421233

42.  Brosse, A., Korobeinikova, A., Gottesman, S. and Guillier, M. (2016) Unexpected properties of sRNA promoters allow feedback control via regulation of a two-component system. Nucleic Acids Res, 44, 9650-9666. http://www.ncbi.nlm.nih.gov/pubmed/27439713

43.  Brandt, T., Cavellini, L., Kuhlbrandt, W. and Cohen, M.M. (2016) A mitofusin-dependent docking ring complex triggers mitochondrial fusion in vitro. Elife, 5. http://www.ncbi.nlm.nih.gov/pubmed/27253069

44.  Berger, H., De Mia, M., Morisse, S., Marchand, C.H., Lemaire, S.D., Wobbe, L. and Kruse, O. (2016) A Light Switch Based on Protein S-Nitrosylation Fine-Tunes Photosynthetic Light Harvesting in Chlamydomonas. Plant Physiol, 171, 821-832. http://www.ncbi.nlm.nih.gov/pubmed/27208221

45.  Bergdoll, L., Ten Brink, F., Nitschke, W., Picot, D. and Baymann, F. (2016) From low- to high-potential bioenergetic chains: Thermodynamic constraints of Q-cycle function. Biochim Biophys Acta, 1857, 1569-1579. http://www.ncbi.nlm.nih.gov/pubmed/27328272

46.  Angius, F., Ilioaia, O., Uzan, M. and Miroux, B. (2016) In Mus-Veteau, I. (ed.), In Heterologous Expression of Membrane Proteins. Springer New York, Vol. 1432, pp. 37-52. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4726752/pdf/pcbi.1004690.pdf



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