2017

Publications 2017

237.     Wang, F., Qi, Y., Malnoe, A., Choquet, Y., Wollman, F.A. and de Vitry, C. (2017) The High Light Response and Redox Control of Thylakoid FtsH Protease in Chlamydomonas reinhardtii. Mol Plant, 10, 99-114. http://www.ncbi.nlm.nih.gov/pubmed/27702692

236.     Stirnemann, G., Duboue-Dijon, E. and Laage, D. (2017) Ab Initio Simulations of Water Dynamics in Aqueous TMAO Solutions: Temperature and Concentration Effects. J Phys Chem B, 121, 11189-11197. http://www.ncbi.nlm.nih.gov/pubmed/29200289

235.     Sauvageot, N., Mokhtari, A., Joyet, P., Budin-Verneuil, A., Blancato, V.S., Repizo, G.D., Henry, C., Pikis, A., Thompson, J., Magni, C. et al. (2017) Enterococcus faecalis Uses a Phosphotransferase System Permease and a Host Colonization-Related ABC Transporter for Maltodextrin Uptake. J Bacteriol, 199. http://www.ncbi.nlm.nih.gov/pubmed/28242718

234.     Salinas-Giege, T., Cavaiuolo, M., Cognat, V., Ubrig, E., Remacle, C., Duchene, A.M., Vallon, O. and Marechal-Drouard, L. (2017) Polycytidylation of mitochondrial mRNAs in Chlamydomonas reinhardtii. Nucleic Acids Res, 45, 12963-12973. http://www.ncbi.nlm.nih.gov/pubmed/29244187

233.     Roy, S., Sharma, B., Pecaut, J., Simon, P., Fontecave, M., Tran, P.D., Derat, E. and Artero, V. (2017) Molecular Cobalt Complexes with Pendant Amines for Selective Electrocatalytic Reduction of Carbon Dioxide to Formic Acid. J Am Chem Soc, 139, 3685-3696. http://www.ncbi.nlm.nih.gov/pubmed/28206761

232.     Raj-Kumar, P.K., Vallon, O. and Liang, C. (2017) In silico analysis of the sequence features responsible for alternatively spliced introns in the model green alga Chlamydomonas reinhardtii. Plant Mol Biol, 94, 253-265. http://www.ncbi.nlm.nih.gov/pubmed/28364390

231.     Rahaman, O., Kalimeri, M., Katava, M., Paciaroni, A. and Sterpone, F. (2017) Configurational Disorder of Water Hydrogen-Bond Network at the Protein Dynamical Transition. J Phys Chem B, 121, 6792-6798. http://www.ncbi.nlm.nih.gov/pubmed/28635287

230.     Puvanendran, D., Cece, Q. and Picard, M. (2017) Reconstitution of the activity of RND efflux pumps: a "bottom-up" approach. Res Microbiol. http://www.ncbi.nlm.nih.gov/pubmed/29217371

229.     Perez-Perez, M.E., Mauries, A., Maes, A., Tourasse, N.J., Hamon, M., Lemaire, S.D. and Marchand, C.H. (2017) The Deep Thioredoxome in Chlamydomonas reinhardtii: New Insights into Redox Regulation. Mol Plant, 10, 1107-1125. http://www.ncbi.nlm.nih.gov/pubmed/28739495

228.     Mazzanti, L., Doutreligne, S., Gageat, C., Derreumaux, P., Taly, A., Baaden, M. and Pasquali, S. (2017) What Can Human-Guided Simulations Bring to RNA Folding? Biophys J, 113, 302-312. http://www.ncbi.nlm.nih.gov/pubmed/28648754

227.     Mazur, A.K. (2017) Weak nanoscale chaos and anomalous relaxation in DNA. Phys Rev E, 95, 062417. http://www.ncbi.nlm.nih.gov/pubmed/28709320

226.     Martin, N., Costa, N., Wien, F., Winnik, F.M., Ortega, C., Herbet, A., Boquet, D. and Tribet, C. (2017) Refolding of Aggregation-Prone ScFv Antibody Fragments Assisted by Hydrophobically Modified Poly(sodium acrylate) Derivatives. Macromol Biosci, 17. http://www.ncbi.nlm.nih.gov/pubmed/27548824

225.     Man, V.H., Nguyen, P.H. and Derreumaux, P. (2017) Conformational Ensembles of the Wild-Type and S8C Abeta1-42 Dimers. J Phys Chem B, 121, 2434-2442. http://www.ncbi.nlm.nih.gov/pubmed/28245647

224.     Maes, A., Gracia, C., Innocenti, N., Zhang, K., Aurell, E. and Hajnsdorf, E. (2017) Landscape of RNA polyadenylation in E. coli. Nucleic Acids Res, 45, 2746-2756. http://www.ncbi.nlm.nih.gov/pubmed/28426097

223.     Ma, M., Li de la Sierra-Gallay, I., Lazar, N., Pellegrini, O., Lepault, J., Condon, C., Durand, D. and van Tilbeurgh, H. (2017) Trz1, the long form RNase Z from yeast, forms a stable heterohexamer with endonuclease Nuc1 and mutarotase. Biochem J, 474, 3599-3613. http://www.ncbi.nlm.nih.gov/pubmed/28899942

222.     Ma, M., Li de la Sierra-Gallay, I., Lazar, N., Pellegrini, O., Durand, D., Marchfelder, A., Condon, C. and van Tilbeurgh, H. (2017) The crystal structure of Trz1, the long form RNase Z from yeast. Nucleic Acids Res, 45, 6209-6216. http://www.ncbi.nlm.nih.gov/pubmed/28379452

221.     Longatte, G., Rappaport, F., Wollman, F.-A., Guille-Collignon, M. and Lemaître, F. (2017) Electrochemical Harvesting of Photosynthetic Electrons from Unicellular Algae Population at the Preparative Scale by Using 2,6-dichlorobenzoquinone. Electrochimica Acta, 236, 337-342. http://www.sciencedirect.com/science/article/pii/S0013468617306047

220.     Longatte, G., Guille-Collignon, M. and Lemaitre, F. (2017) Electrocatalytic Mechanism Involving Michaelis-Menten Kinetics at the Preparative Scale: Theory and Applicability to Photocurrents from a Photosynthetic Algae Suspension With Quinones. Chemphyschem, 18, 2643-2650. http://www.ncbi.nlm.nih.gov/pubmed/28618080

219.     Loiseau, L., Fyfe, C., Aussel, L., Hajj Chehade, M., Hernandez, S.B., Faivre, B., Hamdane, D., Mellot-Draznieks, C., Rascalou, B., Pelosi, L. et al. (2017) The UbiK protein is an accessory factor necessary for bacterial ubiquinone (UQ) biosynthesis and forms a complex with the UQ biogenesis factor UbiJ. J Biol Chem, 292, 11937-11950. http://www.ncbi.nlm.nih.gov/pubmed/28559279

218.     Lev, B., Murail, S., Poitevin, F., Cromer, B.A., Baaden, M., Delarue, M. and Allen, T.W. (2017) String method solution of the gating pathways for a pentameric ligand-gated ion channel. Proc Natl Acad Sci U S A, 114, E4158-E4167. http://www.ncbi.nlm.nih.gov/pubmed/28487483

217.     Leroy, M., Piton, J., Gilet, L., Pellegrini, O., Proux, C., Coppee, J.Y., Figaro, S. and Condon, C. (2017) Rae1/YacP, a new endoribonuclease involved in ribosome-dependent mRNA decay in Bacillus subtilis. EMBO J, 36, 1167-1181. http://www.ncbi.nlm.nih.gov/pubmed/28363943

216.     Laurin, Y., Eyer, J., Robert, C.H., Prevost, C. and Sacquin-Mora, S. (2017) Mobility and Core-Protein Binding Patterns of Disordered C-Terminal Tails in beta-Tubulin Isotypes. Biochemistry, 56, 1746-1756. http://www.ncbi.nlm.nih.gov/pubmed/28290671

215.     Katava, M., Stirnemann, G., Zanatta, M., Capaccioli, S., Pachetti, M., Ngai, K.L., Sterpone, F. and Paciaroni, A. (2017) Critical structural fluctuations of proteins upon thermal unfolding challenge the Lindemann criterion. Proc Natl Acad Sci U S A, 114, 9361-9366. http://www.ncbi.nlm.nih.gov/pubmed/28808004

214.     Katava, M., Maccarini, M., Villain, G., Paciaroni, A., Sztucki, M., Ivanova, O., Madern, D. and Sterpone, F. (2017) Thermal activation of 'allosteric-like' large-scale motions in a eukaryotic Lactate Dehydrogenase. Sci Rep, 7, 41092. http://www.ncbi.nlm.nih.gov/pubmed/28112231

213.     Joyet, P., Mokhtari, A., Riboulet-Bisson, E., Blancato, V.S., Espariz, M., Magni, C., Hartke, A., Deutscher, J. and Sauvageot, N. (2017) Enzymes Required for Maltodextrin Catabolism in Enterococcus faecalis Exhibit Novel Activities. Appl Environ Microbiol, 83. http://www.ncbi.nlm.nih.gov/pubmed/28455338

212.     Jagodnik, J., Thieffrey, D. and Guillier, M. (2017) In de Bruijn, F. J. (ed.), Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria. John Wiley & Sons, Inc., Hoboken, NJ, USA.

211.     Jagodnik, J., Chiaruttini, C. and Guillier, M. (2017) Stem-Loop Structures within mRNA Coding Sequences Activate Translation Initiation and Mediate Control by Small Regulatory RNAs. Mol Cell, 68, 158-170 e153. http://www.ncbi.nlm.nih.gov/pubmed/28918899

210.     Jagodnik, J., Brosse, A., Le Lam, T.N., Chiaruttini, C. and Guillier, M. (2017) Mechanistic study of base-pairing small regulatory RNAs in bacteria. Methods, 117, 67-76. http://www.ncbi.nlm.nih.gov/pubmed/27693881

209.     Jabrani, A., Makamte, S., Moreau, E., Gharbi, Y., Plessis, A., Bruzzone, L., Sanial, M. and Biou, V. (2017) Biophysical characterisation of the novel zinc binding property in Suppressor of Fused. Sci Rep, 7, 11139. http://www.ncbi.nlm.nih.gov/pubmed/28894158

208.     Huan, T.N., Simon, P., Rousse, G., Genois, I., Artero, V. and Fontecave, M. (2017) Porous dendritic copper: an electrocatalyst for highly selective CO2 reduction to formate in water/ionic liquid electrolyte. Chem Sci, 8, 742-747. http://www.ncbi.nlm.nih.gov/pubmed/28451222

207.     Hamouche, L., Laalami, S., Daerr, A., Song, S., Holland, I.B., Seror, S.J., Hamze, K. and Putzer, H. (2017) Bacillus subtilis Swarmer Cells Lead the Swarm, Multiply, and Generate a Trail of Quiescent Descendants. MBio, 8. http://www.ncbi.nlm.nih.gov/pubmed/28174308

206.     Graf, M., Bonetti, D., Lockhart, A., Serhal, K., Kellner, V., Maicher, A., Jolivet, P., Teixeira, M.T. and Luke, B. (2017) Telomere Length Determines TERRA and R-Loop Regulation through the Cell Cycle. Cell, 170, 72-85 e14. http://www.ncbi.nlm.nih.gov/pubmed/28666126

205.     Gold, V.A., Brandt, T., Cavellini, L., Cohen, M.M., Ieva, R. and van der Laan, M. (2017) Analysis of Mitochondrial Membrane Protein Complexes by Electron Cryo-tomography. Methods Mol Biol, 1567, 315-336. http://www.ncbi.nlm.nih.gov/pubmed/28276027

204.     Fu, H.Y., Picot, D., Choquet, Y., Longatte, G., Sayegh, A., Delacotte, J., Guille-Collignon, M., Lemaitre, F., Rappaport, F. and Wollman, F.A. (2017) Redesigning the QA binding site of Photosystem II allows reduction of exogenous quinones. Nat Commun, 8, 15274. http://www.ncbi.nlm.nih.gov/pubmed/28466860

203.     Fu, H., Cai, W., Henin, J., Roux, B. and Chipot, C. (2017) New Coarse Variables for the Accurate Determination of Standard Binding Free Energies. J Chem Theory Comput, 13, 5173-5178. http://www.ncbi.nlm.nih.gov/pubmed/28965398

202.     Fogeron, T., Retailleau, P., Chamoreau, L.M., Fontecave, M. and Li, Y. (2017) The unusual ring scission of a quinoxaline-pyran-fused dithiolene system related to molybdopterin. Dalton Trans, 46, 4161-4164. http://www.ncbi.nlm.nih.gov/pubmed/28277588

201.     Eugene, S., Bourgeron, T. and Xu, Z. (2017) Effects of initial telomere length distribution on senescence onset and heterogeneity. J Theor Biol, 413, 58-65. http://www.ncbi.nlm.nih.gov/pubmed/27864096

200.     Elgrishi, N., Chambers, M.B., Wang, X. and Fontecave, M. (2017) Molecular polypyridine-based metal complexes as catalysts for the reduction of CO2. Chem Soc Rev, 46, 761-796. http://www.ncbi.nlm.nih.gov/pubmed/28084485

199.     Dumas, L., Zito, F., Blangy, S., Auroy, P., Johnson, X., Peltier, G. and Alric, J. (2017) A stromal region of cytochrome b6f subunit IV is involved in the activation of the Stt7 kinase in Chlamydomonas. Proc Natl Acad Sci U S A, 114, 12063-12068. http://www.ncbi.nlm.nih.gov/pubmed/29078388

198.     Doig, A.J., Del Castillo-Frias, M.P., Berthoumieu, O., Tarus, B., Nasica-Labouze, J., Sterpone, F., Nguyen, P.H., Hooper, N.M., Faller, P. and Derreumaux, P. (2017) Why Is Research on Amyloid-beta Failing to Give New Drugs for Alzheimer's Disease? ACS Chem Neurosci, 8, 1435-1437. http://www.ncbi.nlm.nih.gov/pubmed/28586203

197.     De Vecchis, D., Cavellini, L., Baaden, M., Henin, J., Cohen, M.M. and Taly, A. (2017) A membrane-inserted structural model of the yeast mitofusin Fzo1. Sci Rep, 7, 10217. http://www.ncbi.nlm.nih.gov/pubmed/28860650

196.     Dautant, A., Meyer, P. and Georgescauld, F. (2017) Hydrogen/Deuterium Exchange Mass Spectrometry Reveals Mechanistic Details of Activation of Nucleoside Diphosphate Kinases by Oligomerization. Biochemistry, 56, 2886-2896. http://www.ncbi.nlm.nih.gov/pubmed/28481113

195.     Danilowicz, C., Hermans, L., Coljee, V., Prevost, C. and Prentiss, M. (2017) ATP hydrolysis provides functions that promote rejection of pairings between different copies of long repeated sequences. Nucleic Acids Res, 45, 8448-8462. http://www.ncbi.nlm.nih.gov/pubmed/28854739

194.     Cragnolini, T., Chakraborty, D., Sponer, J., Derreumaux, P., Pasquali, S. and Wales, D.J. (2017) Multifunctional energy landscape for a DNA G-quadruplex: An evolved molecular switch. J Chem Phys, 147, 152715. http://www.ncbi.nlm.nih.gov/pubmed/29055346

193.     Colloc'h, N., Sacquin-Mora, S., Avella, G., Dhaussy, A.C., Prange, T., Vallone, B. and Girard, E. (2017) Determinants of neuroglobin plasticity highlighted by joint coarse-grained simulations and high pressure crystallography. Sci Rep, 7, 1858. http://www.ncbi.nlm.nih.gov/pubmed/28500341

192.     Cavellini, L., Meurisse, J., Findinier, J., Erpapazoglou, Z., Belgareh-Touze, N., Weissman, A.M. and Cohen, M.M. (2017) An ubiquitin-dependent balance between mitofusin turnover and fatty acids desaturation regulates mitochondrial fusion. Nat Commun, 8, 15832. http://www.ncbi.nlm.nih.gov/pubmed/28607491

191.     Cavaiuolo, M., Kuras, R., Wollman, F.A., Choquet, Y. and Vallon, O. (2017) Small RNA profiling in Chlamydomonas: insights into chloroplast RNA metabolism. Nucleic Acids Res, 45, 10783-10799. http://www.ncbi.nlm.nih.gov/pubmed/28985404

190.     Caserta, G., Pecqueur, L., Adamska-Venkatesh, A., Papini, C., Roy, S., Artero, V., Atta, M., Reijerse, E., Lubitz, W. and Fontecave, M. (2017) Structural and functional characterization of the hydrogenase-maturation HydF protein. Nat Chem Biol, 13, 779-784. http://www.ncbi.nlm.nih.gov/pubmed/28553946

189.     Carranza, G., Angius, F., Ilioaia, O., Solgadi, A., Miroux, B. and Arechaga, I. (2017) Cardiolipin plays an essential role in the formation of intracellular membranes in Escherichia coli. Biochim Biophys Acta, 1859, 1124-1132. http://www.ncbi.nlm.nih.gov/pubmed/28284722

188.     Bujaldon, S., Kodama, N., Rappaport, F., Subramanyam, R., de Vitry, C., Takahashi, Y. and Wollman, F.A. (2017) Functional Accumulation of Antenna Proteins in Chlorophyll b-Less Mutants of Chlamydomonas reinhardtii. Mol Plant, 10, 115-130. http://www.ncbi.nlm.nih.gov/pubmed/27742488

187.     Braun, F., Durand, S. and Condon, C. (2017) Initiating ribosomes and a 5'/3'-UTR interaction control ribonuclease action to tightly couple B. subtilis hbs mRNA stability with translation. Nucleic Acids Res, 45, 11386-11400. http://www.ncbi.nlm.nih.gov/pubmed/28977557

186.     Bou-Nader, C., Cornu, D., Guerineau, V., Fogeron, T., Fontecave, M. and Hamdane, D. (2017) Enzyme Activation with a Synthetic Catalytic Co-enzyme Intermediate: Nucleotide Methylation by Flavoenzymes. Angew Chem Int Ed Engl, 56, 12523-12527. http://www.ncbi.nlm.nih.gov/pubmed/28796306

185.     Belgareh-Touze, N., Cavellini, L. and Cohen, M.M. (2017) Ubiquitination of ERMES components by the E3 ligase Rsp5 is involved in mitophagy. Autophagy, 13, 114-132. http://www.ncbi.nlm.nih.gov/pubmed/27846375

184.     Barroso da Silva, F.L., Derreumaux, P. and Pasquali, S. (2017) Fast coarse-grained model for RNA titration. J Chem Phys, 146, 035101. http://www.ncbi.nlm.nih.gov/pubmed/28109220

183.     Arragain, S., Bimai, O., Legrand, P., Caillat, S., Ravanat, J.L., Touati, N., Binet, L., Atta, M., Fontecave, M. and Golinelli-Pimpaneau, B. (2017) Nonredox thiolation in tRNA occurring via sulfur activation by a [4Fe-4S] cluster. Proc Natl Acad Sci U S A, 114, 7355-7360. http://www.ncbi.nlm.nih.gov/pubmed/28655838

182.     Aroua, S., Todorova, T.K., Mougel, V., Hommes, P., Reissig, H.-U. and Fontecave, M. (2017) New Cobalt-Bisterpyridyl Catalysts for Hydrogen Evolution Reaction. ChemCatChem, 9, 2099-2105. https://doi.org/10.1002/cctc.201700428

 

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