2017

Publications 2017

1. Wang, F., Qi, Y., Malnoe, A., Choquet, Y., Wollman, F.A. and de Vitry, C. (2017) The High Light Response and Redox Control of Thylakoid FtsH Protease in Chlamydomonas reinhardtii. Mol Plant, 10, 99-114. link

2.  Stirnemann, G., Duboue-Dijon, E. and Laage, D. (2017) Ab Initio Simulations of Water Dynamics in Aqueous TMAO Solutions: Temperature and Concentration Effects. J Phys Chem B, 121, 11189-11197. link

3.  Sauvageot, N., Mokhtari, A., Joyet, P., Budin-Verneuil, A., Blancato, V.S., Repizo, G.D., Henry, C., Pikis, A., Thompson, J., Magni, C. et al. (2017) Enterococcus faecalis Uses a Phosphotransferase System Permease and a Host Colonization-Related ABC Transporter for Maltodextrin Uptake. J Bacteriol, 199. link

4.  Salinas-Giege, T., Cavaiuolo, M., Cognat, V., Ubrig, E., Remacle, C., Duchene, A.M., Vallon, O. and Marechal-Drouard, L. (2017) Polycytidylation of mitochondrial mRNAs in Chlamydomonas reinhardtii. Nucleic Acids Res, 45, 12963-12973. link

5.  Roy, S., Sharma, B., Pecaut, J., Simon, P., Fontecave, M., Tran, P.D., Derat, E. and Artero, V. (2017) Molecular Cobalt Complexes with Pendant Amines for Selective Electrocatalytic Reduction of Carbon Dioxide to Formic Acid. J Am Chem Soc, 139, 3685-3696. link

6.  Raj-Kumar, P.K., Vallon, O. and Liang, C. (2017) In silico analysis of the sequence features responsible for alternatively spliced introns in the model green alga Chlamydomonas reinhardtii. Plant Mol Biol, 94, 253-265. link

7.  Rahaman, O., Kalimeri, M., Katava, M., Paciaroni, A. and Sterpone, F. (2017) Configurational Disorder of Water Hydrogen-Bond Network at the Protein Dynamical Transition. J Phys Chem B, 121, 6792-6798. link

8.  Puvanendran, D., Cece, Q. and Picard, M. (2017) Reconstitution of the activity of RND efflux pumps: a "bottom-up" approach. Res Microbiol. link

9.  Perez-Perez, M.E., Mauries, A., Maes, A., Tourasse, N.J., Hamon, M., Lemaire, S.D. and Marchand, C.H. (2017) The Deep Thioredoxome in Chlamydomonas reinhardtii: New Insights into Redox Regulation. Mol Plant, 10, 1107-1125. link

10.  Mazzanti, L., Doutreligne, S., Gageat, C., Derreumaux, P., Taly, A., Baaden, M. and Pasquali, S. (2017) What Can Human-Guided Simulations Bring to RNA Folding? Biophys J, 113, 302-312. link

11.  Mazur, A.K. (2017) Weak nanoscale chaos and anomalous relaxation in DNA. Phys Rev E, 95, 062417. link

12.  Martin, N., Costa, N., Wien, F., Winnik, F.M., Ortega, C., Herbet, A., Boquet, D. and Tribet, C. (2017) Refolding of Aggregation-Prone ScFv Antibody Fragments Assisted by Hydrophobically Modified Poly(sodium acrylate) Derivatives. Macromol Biosci, 17. link

13.  Man, V.H., Nguyen, P.H. and Derreumaux, P. (2017) Conformational Ensembles of the Wild-Type and S8C Abeta1-42 Dimers. J Phys Chem B, 121, 2434-2442. link

14.  Maes, A., Gracia, C., Innocenti, N., Zhang, K., Aurell, E. and Hajnsdorf, E. (2017) Landscape of RNA polyadenylation in E. coli. Nucleic Acids Res, 45, 2746-2756. link

15.  Ma, M., Li de la Sierra-Gallay, I., Lazar, N., Pellegrini, O., Lepault, J., Condon, C., Durand, D. and van Tilbeurgh, H. (2017) Trz1, the long form RNase Z from yeast, forms a stable heterohexamer with endonuclease Nuc1 and mutarotase. Biochem J, 474, 3599-3613. link

16.  Ma, M., Li de la Sierra-Gallay, I., Lazar, N., Pellegrini, O., Durand, D., Marchfelder, A., Condon, C. and van Tilbeurgh, H. (2017) The crystal structure of Trz1, the long form RNase Z from yeast. Nucleic Acids Res, 45, 6209-6216. link

17.  Longatte, G., Rappaport, F., Wollman, F.-A., Guille-Collignon, M. and Lemaître, F. (2017) Electrochemical Harvesting of Photosynthetic Electrons from Unicellular Algae Population at the Preparative Scale by Using 2,6-dichlorobenzoquinone. Electrochimica Acta, 236, 337-342. link

18.  Longatte, G., Guille-Collignon, M. and Lemaitre, F. (2017) Electrocatalytic Mechanism Involving Michaelis-Menten Kinetics at the Preparative Scale: Theory and Applicability to Photocurrents from a Photosynthetic Algae Suspension With Quinones. Chemphyschem, 18, 2643-2650. link

19.  Loiseau, L., Fyfe, C., Aussel, L., Hajj Chehade, M., Hernandez, S.B., Faivre, B., Hamdane, D., Mellot-Draznieks, C., Rascalou, B., Pelosi, L. et al. (2017) The UbiK protein is an accessory factor necessary for bacterial ubiquinone (UQ) biosynthesis and forms a complex with the UQ biogenesis factor UbiJ. J Biol Chem, 292, 11937-11950. link

20.  Lev, B., Murail, S., Poitevin, F., Cromer, B.A., Baaden, M., Delarue, M. and Allen, T.W. (2017) String method solution of the gating pathways for a pentameric ligand-gated ion channel. Proc Natl Acad Sci U S A, 114, E4158-E4167. link

21.  Leroy, M., Piton, J., Gilet, L., Pellegrini, O., Proux, C., Coppee, J.Y., Figaro, S. and Condon, C. (2017) Rae1/YacP, a new endoribonuclease involved in ribosome-dependent mRNA decay in Bacillus subtilis. EMBO J, 36, 1167-1181. link

22.  Laurin, Y., Eyer, J., Robert, C.H., Prevost, C. and Sacquin-Mora, S. (2017) Mobility and Core-Protein Binding Patterns of Disordered C-Terminal Tails in beta-Tubulin Isotypes. Biochemistry, 56, 1746-1756. link

23.  Katava, M., Stirnemann, G., Zanatta, M., Capaccioli, S., Pachetti, M., Ngai, K.L., Sterpone, F. and Paciaroni, A. (2017) Critical structural fluctuations of proteins upon thermal unfolding challenge the Lindemann criterion. Proc Natl Acad Sci U S A, 114, 9361-9366. link

24.  Katava, M., Maccarini, M., Villain, G., Paciaroni, A., Sztucki, M., Ivanova, O., Madern, D. and Sterpone, F. (2017) Thermal activation of 'allosteric-like' large-scale motions in a eukaryotic Lactate Dehydrogenase. Sci Rep, 7, 41092. link

25.  Joyet, P., Mokhtari, A., Riboulet-Bisson, E., Blancato, V.S., Espariz, M., Magni, C., Hartke, A., Deutscher, J. and Sauvageot, N. (2017) Enzymes Required for Maltodextrin Catabolism in Enterococcus faecalis Exhibit Novel Activities. Appl Environ Microbiol, 83. link

26.  Jagodnik, J., Thieffrey, D. and Guillier, M. (2017) In de Bruijn, F. J. (ed.), Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria. John Wiley & Sons, Inc., Hoboken, NJ, USA. link

27.  Jagodnik, J., Chiaruttini, C. and Guillier, M. (2017) Stem-Loop Structures within mRNA Coding Sequences Activate Translation Initiation and Mediate Control by Small Regulatory RNAs. Mol Cell, 68, 158-170 e153. link

28.  Jagodnik, J., Brosse, A., Le Lam, T.N., Chiaruttini, C. and Guillier, M. (2017) Mechanistic study of base-pairing small regulatory RNAs in bacteria. Methods, 117, 67-76. link

29.  Jabrani, A., Makamte, S., Moreau, E., Gharbi, Y., Plessis, A., Bruzzone, L., Sanial, M. and Biou, V. (2017) Biophysical characterisation of the novel zinc binding property in Suppressor of Fused. Sci Rep, 7, 11139. link

30.  Huan, T.N., Simon, P., Rousse, G., Genois, I., Artero, V. and Fontecave, M. (2017) Porous dendritic copper: an electrocatalyst for highly selective CO2 reduction to formate in water/ionic liquid electrolyte. Chem Sci, 8, 742-747. link

31.  Hamouche, L., Laalami, S., Daerr, A., Song, S., Holland, I.B., Seror, S.J., Hamze, K. and Putzer, H. (2017) Bacillus subtilis Swarmer Cells Lead the Swarm, Multiply, and Generate a Trail of Quiescent Descendants. MBio, 8. link

32.  Graf, M., Bonetti, D., Lockhart, A., Serhal, K., Kellner, V., Maicher, A., Jolivet, P., Teixeira, M.T. and Luke, B. (2017) Telomere Length Determines TERRA and R-Loop Regulation through the Cell Cycle. Cell, 170, 72-85 e14. link

33.  Gold, V.A., Brandt, T., Cavellini, L., Cohen, M.M., Ieva, R. and van der Laan, M. (2017) Analysis of Mitochondrial Membrane Protein Complexes by Electron Cryo-tomography. Methods Mol Biol, 1567, 315-336. link

34.  Fu, H.Y., Picot, D., Choquet, Y., Longatte, G., Sayegh, A., Delacotte, J., Guille-Collignon, M., Lemaitre, F., Rappaport, F. and Wollman, F.A. (2017) Redesigning the QA binding site of Photosystem II allows reduction of exogenous quinones. Nat Commun, 8, 15274. link

35.  Fu, H., Cai, W., Henin, J., Roux, B. and Chipot, C. (2017) New Coarse Variables for the Accurate Determination of Standard Binding Free Energies. J Chem Theory Comput, 13, 5173-5178. link

36.  Fogeron, T., Retailleau, P., Chamoreau, L.M., Fontecave, M. and Li, Y. (2017) The unusual ring scission of a quinoxaline-pyran-fused dithiolene system related to molybdopterin. Dalton Trans, 46, 4161-4164. link

37.  Eugene, S., Bourgeron, T. and Xu, Z. (2017) Effects of initial telomere length distribution on senescence onset and heterogeneity. J Theor Biol, 413, 58-65. link

38.  Elgrishi, N., Chambers, M.B., Wang, X. and Fontecave, M. (2017) Molecular polypyridine-based metal complexes as catalysts for the reduction of CO2. Chem Soc Rev, 46, 761-796. link

39.  Dumas, L., Zito, F., Blangy, S., Auroy, P., Johnson, X., Peltier, G. and Alric, J. (2017) A stromal region of cytochrome b6f subunit IV is involved in the activation of the Stt7 kinase in Chlamydomonas. Proc Natl Acad Sci U S A, 114, 12063-12068. link

40.  Doig, A.J., Del Castillo-Frias, M.P., Berthoumieu, O., Tarus, B., Nasica-Labouze, J., Sterpone, F., Nguyen, P.H., Hooper, N.M., Faller, P. and Derreumaux, P. (2017) Why Is Research on Amyloid-beta Failing to Give New Drugs for Alzheimer's Disease? ACS Chem Neurosci, 8, 1435-1437. link

41.  De Vecchis, D., Cavellini, L., Baaden, M., Henin, J., Cohen, M.M. and Taly, A. (2017) A membrane-inserted structural model of the yeast mitofusin Fzo1. Sci Rep, 7, 10217. link

42.  Dautant, A., Meyer, P. and Georgescauld, F. (2017) Hydrogen/Deuterium Exchange Mass Spectrometry Reveals Mechanistic Details of Activation of Nucleoside Diphosphate Kinases by Oligomerization. Biochemistry, 56, 2886-2896. link

43.  Danilowicz, C., Hermans, L., Coljee, V., Prevost, C. and Prentiss, M. (2017) ATP hydrolysis provides functions that promote rejection of pairings between different copies of long repeated sequences. Nucleic Acids Res, 45, 8448-8462. link

44.  Cragnolini, T., Chakraborty, D., Sponer, J., Derreumaux, P., Pasquali, S. and Wales, D.J. (2017) Multifunctional energy landscape for a DNA G-quadruplex: An evolved molecular switch. J Chem Phys, 147, 152715. link

45.  Colloc'h, N., Sacquin-Mora, S., Avella, G., Dhaussy, A.C., Prange, T., Vallone, B. and Girard, E. (2017) Determinants of neuroglobin plasticity highlighted by joint coarse-grained simulations and high pressure crystallography. Sci Rep, 7, 1858. link

46.  Cavellini, L., Meurisse, J., Findinier, J., Erpapazoglou, Z., Belgareh-Touze, N., Weissman, A.M. and Cohen, M.M. (2017) An ubiquitin-dependent balance between mitofusin turnover and fatty acids desaturation regulates mitochondrial fusion. Nat Commun, 8, 15832. link

47.  Cavaiuolo, M., Kuras, R., Wollman, F.A., Choquet, Y. and Vallon, O. (2017) Small RNA profiling in Chlamydomonas: insights into chloroplast RNA metabolism. Nucleic Acids Res, 45, 10783-10799. link

48.  Caserta, G., Pecqueur, L., Adamska-Venkatesh, A., Papini, C., Roy, S., Artero, V., Atta, M., Reijerse, E., Lubitz, W. and Fontecave, M. (2017) Structural and functional characterization of the hydrogenase-maturation HydF protein. Nat Chem Biol, 13, 779-784. link

49.  Carranza, G., Angius, F., Ilioaia, O., Solgadi, A., Miroux, B. and Arechaga, I. (2017) Cardiolipin plays an essential role in the formation of intracellular membranes in Escherichia coli. Biochim Biophys Acta, 1859, 1124-1132. link

50.  Bujaldon, S., Kodama, N., Rappaport, F., Subramanyam, R., de Vitry, C., Takahashi, Y. and Wollman, F.A. (2017) Functional Accumulation of Antenna Proteins in Chlorophyll b-Less Mutants of Chlamydomonas reinhardtii. Mol Plant, 10, 115-130. link

51.  Braun, F., Durand, S. and Condon, C. (2017) Initiating ribosomes and a 5'/3'-UTR interaction control ribonuclease action to tightly couple B. subtilis hbs mRNA stability with translation. Nucleic Acids Res, 45, 11386-11400. link

52.  Bou-Nader, C., Cornu, D., Guerineau, V., Fogeron, T., Fontecave, M. and Hamdane, D. (2017) Enzyme Activation with a Synthetic Catalytic Co-enzyme Intermediate: Nucleotide Methylation by Flavoenzymes. Angew Chem Int Ed Engl, 56, 12523-12527. link

53.  Belgareh-Touze, N., Cavellini, L. and Cohen, M.M. (2017) Ubiquitination of ERMES components by the E3 ligase Rsp5 is involved in mitophagy. Autophagy, 13, 114-132. link

54.  Barroso da Silva, F.L., Derreumaux, P. and Pasquali, S. (2017) Fast coarse-grained model for RNA titration. J Chem Phys, 146, 035101. link

55.  Arragain, S., Bimai, O., Legrand, P., Caillat, S., Ravanat, J.L., Touati, N., Binet, L., Atta, M., Fontecave, M. and Golinelli-Pimpaneau, B. (2017) Nonredox thiolation in tRNA occurring via sulfur activation by a [4Fe-4S] cluster. Proc Natl Acad Sci U S A, 114, 7355-7360. link

56.  Aroua, S., Todorova, T.K., Mougel, V., Hommes, P., Reissig, H.-U. and Fontecave, M. (2017) New Cobalt-Bisterpyridyl Catalysts for Hydrogen Evolution Reaction. ChemCatChem, 9, 2099-2105. link

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