2017

Publications 2017

(1) Danilowicz, C.; Hermans, L.; Coljee, V.; Prévost, C.; Prentiss, M. ATP Hydrolysis Provides Functions That Promote Rejection of Pairings between Different Copies of Long Repeated Sequences. Nucleic Acids Res 2017, 45 (14), 8448–8462 DOI: 10.1093/nar/gkx582.

(2) De Vecchis, D.; Cavellini, L.; Baaden, M.; Hénin, J.; Cohen, M. M.; Taly, A. A Membrane-Inserted Structural Model of the Yeast Mitofusin Fzo1. Sci Rep 2017, 7 (1), 10217 DOI: 10.1038/s41598-017-10687-2.

(3) Man, V. H.; Nguyen, P. H.; Derreumaux, P. High-Resolution Structures of the Amyloid-β 1-42 Dimers from the Comparison of Four Atomistic Force Fields. J Phys Chem B 2017, 121 (24), 5977–5987 DOI: 10.1021/acs.jpcb.7b04689.

(4) Pérez-Pérez, M. E.; Mauriès, A.; Maes, A.; Tourasse, N. J.; Hamon, M.; Lemaire, S. D.; Marchand, C. H. The Deep Thioredoxome in Chlamydomonas Reinhardtii: New Insights into Redox Regulation. Mol Plant 2017, 10 (8), 1107–1125 DOI: 10.1016/j.molp.2017.07.009.

(5) Katava, M.; Stirnemann, G.; Zanatta, M.; Capaccioli, S.; Pachetti, M.; Ngai, K. L.; Sterpone, F.; Paciaroni, A. Critical Structural Fluctuations of Proteins upon Thermal Unfolding Challenge the Lindemann Criterion. Proc. Natl. Acad. Sci. U.S.A. 2017 DOI: 10.1073/pnas.1707357114.

(6) Mazur, A. K. Weak Nanoscale Chaos and Anomalous Relaxation in DNA. Phys Rev E 2017, 95 (6–1), 062417 DOI: 10.1103/PhysRevE.95.062417.

(7) Rahaman, O.; Kalimeri, M.; Katava, M.; Paciaroni, A.; Sterpone, F. Configurational Disorder of Water Hydrogen-Bond Network at the Protein Dynamical Transition. J Phys Chem B 2017, 121 (28), 6792–6798 DOI: 10.1021/acs.jpcb.7b03888.

(8) Maes, A.; Gracia, C.; Innocenti, N.; Zhang, K.; Aurell, E.; Hajnsdorf, E. Landscape of RNA Polyadenylation in E. Coli. Nucleic Acids Res. 2017, 45 (5), 2746–2756 DOI: 10.1093/nar/gkw894.

(9) Jagodnik, J.; Brosse, A.; Le Lam, T. N.; Chiaruttini, C.; Guillier, M. Mechanistic Study of Base-Pairing Small Regulatory RNAs in Bacteria. Methods 2017, 117, 67–76 DOI: 10.1016/j.ymeth.2016.09.012.

(10) Ma, M.; Li de la Sierra-Gallay, I.; Lazar, N.; Pellegrini, O.; Durand, D.; Marchfelder, A.; Condon, C.; van Tilbeurgh, H. The Crystal Structure of Trz1, the Long Form RNase Z from Yeast. Nucleic Acids Res. 2017, 45 (10), 6209–6216 DOI: 10.1093/nar/gkx216.

(11) Leroy, M.; Piton, J.; Gilet, L.; Pellegrini, O.; Proux, C.; Coppée, J.-Y.; Figaro, S.; Condon, C. Rae1/YacP, a New Endoribonuclease Involved in Ribosome-Dependent MRNA Decay in Bacillus Subtilis. EMBO J. 2017, 36 (9), 1167–1181 DOI: 10.15252/embj.201796540.

(12) Durand, S.; Braun, F.; Helfer, A.-C.; Romby, P.; Condon, C. SRNA-Mediated Activation of Gene Expression by Inhibition of 5’-3’ Exonucleolytic MRNA Degradation. Elife 2017, 6 DOI: 10.7554/eLife.23602.

(13) Hamouche, L.; Laalami, S.; Daerr, A.; Song, S.; Holland, I. B.; Séror, S. J.; Hamze, K.; Putzer, H. Bacillus Subtilis Swarmer Cells Lead the Swarm, Multiply, and Generate a Trail of Quiescent Descendants. MBio 2017, 8 (1) DOI: 10.1128/mBio.02102-16.

(14) Graf, M.; Bonetti, D.; Lockhart, A.; Serhal, K.; Kellner, V.; Maicher, A.; Jolivet, P.; Teixeira, M. T.; Luke, B. Telomere Length Determines TERRA and R-Loop Regulation through the Cell Cycle. Cell 2017, 170 (1), 72–85.e14 DOI: 10.1016/j.cell.2017.06.006.

(15) Mazur, A. K. Weak Nanoscale Chaos and Anomalous Relaxation in DNA. Phys. Rev. E 2017, 95 (6), 062417 DOI: 10.1103/PhysRevE.95.062417.

(16) Lev, B.; Murail, S.; Poitevin, F.; Cromer, B. A.; Baaden, M.; Delarue, M.; Allen, T. W. String Method Solution of the Gating Pathways for a Pentameric Ligand-Gated Ion Channel. Proc. Natl. Acad. Sci. U.S.A. 2017, 114 (21), E4158–E4167 DOI: 10.1073/pnas.1617567114.

(17) Mazzanti, L.; Doutreligne, S.; Gageat, C.; Derreumaux, P.; Taly, A.; Baaden, M.; Pasquali, S. What Can Human-Guided Simulations Bring to RNA Folding? Biophys. J. 2017 DOI: 10.1016/j.bpj.2017.05.047.

(18) Doig, A. J.; Del Castillo-Frias, M. P.; Berthoumieu, O.; Tarus, B.; Nasica-Labouze, J.; Sterpone, F.; Nguyen, P. H.; Hooper, N. M.; Faller, P.; Derreumaux, P. Why Is Research on Amyloid-β Failing to Give New Drugs for Alzheimer’s Disease? ACS Chem Neurosci 2017 DOI: 10.1021/acschemneuro.7b00188.

(19) Laurin, Y.; Eyer, J.; Robert, C. H.; Prevost, C.; Sacquin-Mora, S. Mobility and Core-Protein Binding Patterns of Disordered C-Terminal Tails in β-Tubulin Isotypes. Biochemistry 2017, 56 (12), 1746–1756 DOI: 10.1021/acs.biochem.6b00988.

(20) Colloc’h, N.; Sacquin-Mora, S.; Avella, G.; Dhaussy, A.-C.; Prangé, T.; Vallone, B.; Girard, E. Determinants of Neuroglobin Plasticity Highlighted by Joint Coarse-Grained Simulations and High Pressure Crystallography. Sci Rep 2017, 7 (1), 1858 DOI: 10.1038/s41598-017-02097-1.

(21) Katava, M.; Maccarini, M.; Villain, G.; Paciaroni, A.; Sztucki, M.; Ivanova, O.; Madern, D.; Sterpone, F. Thermal Activation of “Allosteric-like” Large-Scale Motions in a Eukaryotic Lactate Dehydrogenase. Sci Rep 2017, 7, 41092 DOI: 10.1038/srep41092.

(22) Carranza, G.; Angius, F.; Ilioaia, O.; Solgadi, A.; Miroux, B.; Arechaga, I. Cardiolipin Plays an Essential Role in the Formation of Intracellular Membranes in Escherichia Coli. Biochim. Biophys. Acta 2017, 1859 (6), 1124–1132 DOI: 10.1016/j.bbamem.2017.03.006.

(23) Bujaldon, S.; Kodama, N.; Rappaport, F.; Subramanyam, R.; de Vitry, C.; Takahashi, Y.; Wollman, F.-A. Functional Accumulation of Antenna Proteins in Chlorophyll B-Less Mutants of Chlamydomonas Reinhardtii. Mol Plant 2017, 10 (1), 115–130 DOI: 10.1016/j.molp.2016.10.001.

(24) Wang, F.; Qi, Y.; Malnoë, A.; Choquet, Y.; Wollman, F.-A.; de Vitry, C. The High Light Response and Redox Control of Thylakoid FtsH Protease in Chlamydomonas Reinhardtii. Mol Plant 2017, 10 (1), 99–114 DOI: 10.1016/j.molp.2016.09.012.

(25) Gold, V. A. M.; Brandt, T.; Cavellini, L.; Cohen, M. M.; Ieva, R.; van der Laan, M. Analysis of Mitochondrial Membrane Protein Complexes by Electron Cryo-Tomography. Methods Mol. Biol. 2017, 1567, 315–336 DOI: 10.1007/978-1-4939-6824-4_19.

(26) Eugene, S.; Bourgeron, T.; Xu, Z. Effects of Initial Telomere Length Distribution on Senescence Onset and Heterogeneity. J. Theor. Biol. 2017, 413, 58–65 DOI: 10.1016/j.jtbi.2016.11.010.

(27) Cavellini, L.; Meurisse, J.; Findinier, J.; Erpapazoglou, Z.; Belgareh-Touze, N.; Weissman, A. M.; Cohen, M. M. An Ubiquitin-Dependent Balance between Mitofusin Turnover and Fatty Acids Desaturation Regulates Mitochondrial Fusion. Nat. Commun. 2017, 8, 15832 DOI: 10.1038/ncomms15832.

(28) Belgareh-Touze, N.; Cavellini, L.; Cohen, M. M. Ubiquitination of ERMES Components by the E3 Ligase Rsp5 Is Involved in Mitophagy. Autophagy 2017, 13 (1), 114–132 DOI: 10.1080/15548627.2016.1252889.

(29) Longatte, G.; Rappaport, F.; Wollman, F.-A.; Guille-Collignon, M.; Lemaitre, F. Electrochemical Harvesting of Photosynthetic Electrons from Unicellular Algae Population at the Preparative Scale by Using 2,6-Dichlorobenzoquinone. Electrochim. Acta 2017, 236, 327–332 DOI: 10.1016/j.electacta.2017.03.124.

(30) Fu, H.-Y.; Picot, D.; Choquet, Y.; Longatte, G.; Sayegh, A.; Delacotte, J.; Guille-Collignon, M.; Lemaître, F.; Rappaport, F.; Wollman, F.-A. Redesigning the QA Binding Site of Photosystem II Allows Reduction of Exogenous Quinones. Nat Commun 2017, 8, 15274 DOI: 10.1038/ncomms15274.

(31) Loiseau, L.; Fyfe, C.; Aussel, L.; Hajj Chehade, M.; Hernández, S. B.; Faivre, B.; Hamdane, D.; Mellot-Draznieks, C.; Rascalou, B.; Pelosi, L.; Velours, C.; Cornu, D.; Lombard, M.; Casadesús, J.; Pierrel, F.; Fontecave, M.; Barras, F. The UbiK Protein Is an Accessory Factor Necessary for Bacterial Ubiquinone (UQ) Biosynthesis and Forms a Complex with the UQ Biogenesis Factor UbiJ. J. Biol. Chem. 2017 DOI: 10.1074/jbc.M117.789164.

(32) Arragain, S.; Bimai, O.; Legrand, P.; Caillat, S.; Ravanat, J.-L.; Touati, N.; Binet, L.; Atta, M.; Fontecave, M.; Golinelli-Pimpaneau, B. Nonredox Thiolation in TRNA Occurring via Sulfur Activation by a [4Fe-4S] Cluster. PNAS 2017, 201700902 DOI: 10.1073/pnas.1700902114.

(33) Caserta, G.; Pecqueur, L.; Adamska-Venkatesh, A.; Papini, C.; Roy, S.; Artero, V.; Atta, M.; Reijerse, E.; Lubitz, W.; Fontecave, M. Structural and Functional Characterization of the Hydrogenase-Maturation HydF Protein. Nat. Chem. Biol. 2017, 13 (7), 779–784 DOI: 10.1038/nchembio.2385.

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