Thème 1: Contrôle post-transcriptionnel

1.         Arragain, S., Bimai, O., Legrand, P., Caillat, S., Ravanat, J.L., Touati, N., Binet, L., Atta, M., Fontecave, M. and Golinelli-Pimpaneau, B. (2017) Nonredox thiolation in tRNA occurring via sulfur activation by a [4Fe-4S] cluster. Proc Natl Acad Sci U S A, 114, 7355-7360.

2.         Banroques, J. and Tanner, N.K. (2015) Bioinformatics and biochemical methods to study the structural and functional elements of DEAD-box RNA helicases. Methods Mol Biol, 1259, 165-181.

3.         Barroso da Silva, F.L., Derreumaux, P. and Pasquali, S. (2017) Fast coarse-grained model for RNA titration. J Chem Phys, 146, 035101.

4.         Barroso da Silva, F.L., Derreumaux, P. and Pasquali, S. (2018) Protein-RNA complexation driven by the charge regulation mechanism. Biochem Biophys Res Commun, 498, 264-273.

5.         Baumgardt, K., Gilet, L., Figaro, S. and Condon, C. (2018) The essential nature of YqfG, a YbeY homologue required for 3' maturation of Bacillus subtilis 16S ribosomal RNA is suppressed by deletion of RNase R. Nucleic Acids Res.

6.         Bizebard, T. and Dreyfus, M. (2015) A FRET-based, continuous assay for the helicase activity of DEAD-box proteins. Methods Mol Biol, 1259, 199-209.

7.         Blaby, I.K., Blaby-Haas, C.E., Perez-Perez, M.E., Schmollinger, S., Fitz-Gibbon, S., Lemaire, S.D. and Merchant, S.S. (2015) Genome-wide analysis on Chlamydomonas reinhardtii reveals the impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes. Plant J, 84, 974-988.

8.         Bou-Nader, C., Barraud, P., Pecqueur, L., Sacquin-Mora, S., Pérez, J., Velours, C., Fontecave, M., Tisné, C. and Hamdane, D. (2018) Molecular basis for transfer RNA substrate recognition by human dihydrouridine synthase. Nucleic Acids Res, In press.

9.         Bou-Nader, C., Bregeon, D., Pecqueur, L., Fontecave, M. and Hamdane, D. (2018) Electrostatic Potential in the tRNA Binding Evolution of Dihydrouridine Synthases. Biochemistry.

10.       Bou-Nader, C., Cornu, D., Guerineau, V., Fogeron, T., Fontecave, M. and Hamdane, D. (2017) Enzyme Activation with a Synthetic Catalytic Co-enzyme Intermediate: Nucleotide Methylation by Flavoenzymes. Angew Chem Int Ed Engl, 56, 12523-12527.

11.       Bou-Nader, C., Pecqueur, L., Bregeon, D., Kamah, A., Guerineau, V., Golinelli-Pimpaneau, B., Guimaraes, B.G., Fontecave, M. and Hamdane, D. (2015) An extended dsRBD is required for post-transcriptional modification in human tRNAs. Nucleic Acids Res, 43, 9446-9456.

12.       Boudry, P., Gracia, C., Monot, M., Caillet, J., Saujet, L., Hajnsdorf, E., Dupuy, B., Martin-Verstraete, I. and Soutourina, O. (2014) Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile. J Bacteriol, 196, 3234-3248.

13.       Boulouis, A., Drapier, D., Razafimanantsoa, H., Wostrikoff, K., Tourasse, N.J., Pascal, K., Girard-Bascou, J., Vallon, O., Wollman, F.A. and Choquet, Y. (2015) Spontaneous dominant mutations in chlamydomonas highlight ongoing evolution by gene diversification. Plant Cell, 27, 984-1001.

14.       Bourgeron, T., Xu, Z., Doumic, M. and Teixeira, M.T. (2015) The asymmetry of telomere replication contributes to replicative senescence heterogeneity. Sci Rep, 5, 15326.

15.       Braun, F., Durand, S. and Condon, C. (2017) Initiating ribosomes and a 5'/3'-UTR interaction control ribonuclease action to tightly couple B. subtilis hbs mRNA stability with translation. Nucleic Acids Res, 45, 11386-11400.

16.       Brechemier-Baey, D., Dominguez-Ramirez, L., Oberto, J. and Plumbridge, J. (2015) Operator recognition by the ROK transcription factor family members, NagC and Mlc. Nucleic Acids Res, 43, 361-372.

17.       Brosse, A. and Guillier, M. (2018) Bacterial small RNAs in mixed regulatory networks. Microbiol. Spectrum In Press.

18.       Brosse, A., Korobeinikova, A., Gottesman, S. and Guillier, M. (2016) Unexpected properties of sRNA promoters allow feedback control via regulation of a two-component system. Nucleic Acids Res, 44, 9650-9666.

19.       Caillet, J., Gracia, C., Fontaine, F. and Hajnsdorf, E. (2014) Clostridium difficile Hfq can replace Escherichia coli Hfq for most of its function. RNA, 20, 1567-1578.

20.       Cavaiuolo, M., Kuras, R., Wollman, F.A., Choquet, Y. and Vallon, O. (2017) Small RNA profiling in Chlamydomonas: insights into chloroplast RNA metabolism. Nucleic Acids Res, 45, 10783-10799.

21.       Condon, C. (2015) Airpnp: Auto- and Integrated Regulation of Polynucleotide Phosphorylase. J Bacteriol, 197, 3748-3750.

22.       Condon, C., Piton, J. and Braun, F. (2018) Distribution of the ribosome associated endonuclease Rae1 and the potential role of conserved amino acids in codon recognition. RNA Biol, 1-13.

23.       Cragnolini, T., Chakraborty, D., Sponer, J., Derreumaux, P., Pasquali, S. and Wales, D.J. (2017) Multifunctional energy landscape for a DNA G-quadruplex: An evolved molecular switch. J Chem Phys, 147, 152715.

24.       Cragnolini, T., Derreumaux, P. and Pasquali, S. (2013) Coarse-grained simulations of RNA and DNA duplexes. J Phys Chem B, 117, 8047-8060.

25.       Cragnolini, T., Derreumaux, P. and Pasquali, S. (2015) Ab initio RNA folding. J Phys Condens Matter, 27, 233102.

26.       Cragnolini, T., Laurin, Y., Derreumaux, P. and Pasquali, S. (2015) Coarse-Grained HiRE-RNA Model for ab Initio RNA Folding beyond Simple Molecules, Including Noncanonical and Multiple Base Pairings. J Chem Theory Comput, 11, 3510-3522.

27.       Crozet, P., Navarro, F.J., Willmund, F., Mehrshahi, P., Bakowski, K., Lauersen, K.J., Perez-Perez, M.E., Auroy, P., Gorchs Rovira, A., Sauret-Gueto, S. et al. (2018) Birth of a photosynthetic chassis: a MoClo toolkit enabling synthetic biology in the microalga Chlamydomonas reinhardtii. ACS Synth Biol.

28.       Dahmane, N., Gadelle, D., Delmas, S., Criscuolo, A., Eberhard, S., Desnoues, N., Collin, S., Zhang, H., Pommier, Y., Forterre, P. et al. (2016) topIb, a phylogenetic hallmark gene of Thaumarchaeota encodes a functional eukaryote-like topoisomerase IB. Nucleic Acids Res, 44, 2795-2805.

29.       Danilowicz, C., Hermans, L., Coljee, V., Prevost, C. and Prentiss, M. (2017) ATP hydrolysis provides functions that promote rejection of pairings between different copies of long repeated sequences. Nucleic Acids Res, 45, 8448-8462.

30.       Danilowicz, C., Yang, D., Kelley, C., Prevost, C. and Prentiss, M. (2015) The poor homology stringency in the heteroduplex allows strand exchange to incorporate desirable mismatches without sacrificing recognition in vivo. Nucleic Acids Res, 43, 6473-6485.

31.       Delan-Forino, C., Deforges, J., Benard, L., Sargueil, B., Maurel, M.C. and Torchet, C. (2014) Structural analyses of Avocado sunblotch viroid reveal differences in the folding of plus and minus RNA strands. Viruses, 6, 489-506.

32.       DiChiara, J.M., Liu, B., Figaro, S., Condon, C. and Bechhofer, D.H. (2016) Mapping of internal monophosphate 5' ends of Bacillus subtilis messenger RNAs and ribosomal RNAs in wild-type and ribonuclease-mutant strains. Nucleic Acids Res, 44, 3373-3389.

33.       Durand, S., Braun, F., Lioliou, E., Romilly, C., Helfer, A.C., Kuhn, L., Quittot, N., Nicolas, P., Romby, P. and Condon, C. (2015) A Nitric Oxide Regulated Small RNA Controls Expression of Genes Involved in Redox Homeostasis in Bacillus subtilis. PLoS Genet, 11, e1004957.

34.       Durand, S. and Condon, C. (2018) RNases and Helicases in Gram-Positive Bacteria. Microbiol Spectr, 6.

35.       Durand, S., Tomasini, A., Braun, F., Condon, C. and Romby, P. (2015) sRNA and mRNA turnover in Gram-positive bacteria. FEMS Microbiol Rev.

36.       El Mishri, E.S., Boutant, E., Mouhand, A., Larue, V., Thomas, A., Richert, L., Vivet-Boudout, V., Mély, Y., Tisné, C., Muriaux, D. et al. (2018) The NC domain and the p6 PTAP motif of HIV-1 Gag both contribute to the interaction of Gag with the cellular TSG101-UEV domain. Biochem Biophys Acta, In press.

37.       Elbahnsi, A., Retureau, R., Baaden, M., Hartmann, B. and Oguey, C. (2018) Holding the Nucleosome Together: A Quantitative Description of the DNA-Histone Interface in Solution. J Chem Theory Comput, 14, 1045-1058.

38.       Eugene, S., Bourgeron, T. and Xu, Z. (2017) Effects of initial telomere length distribution on senescence onset and heterogeneity. J Theor Biol, 413, 58-65.

39.       Fallet, E., Jolivet, P., Soudet, J., Lisby, M., Gilson, E. and Teixeira, M.T. (2014) Length-dependent processing of telomeres in the absence of telomerase. Nucleic Acids Res.

40.       Figaro, S., Durand, S., Gilet, L., Cayet, N., Sachse, M. and Condon, C. (2013) Bacillus subtilis mutants with knockouts of the genes encoding ribonucleases RNase Y and RNase J1 are viable, with major defects in cell morphology, sporulation, and competence. J Bacteriol, 195, 2340-2348.

41.       Fontaine, F., Gasiorowski, E., Gracia, C., Ballouche, M., Caillet, J., Marchais, A. and Hajnsdorf, E. (2016) The small RNA SraG participates in PNPase homeostasis. RNA, 22, 1560-1573.

42.       Gaugue, I., Oberto, J. and Plumbridge, J. (2014) Regulation of amino sugar utilization in Bacillus subtilis by the GntR family regulators, NagR and GamR. Mol Microbiol, 92, 100-115.

43.       Gilet, L., DiChiara, J.M., Figaro, S., Bechhofer, D.H. and Condon, C. (2015) Small stable RNA maturation and turnover in Bacillus subtilis. Mol Microbiol, 95, 270-282.

44.       Graf, M., Bonetti, D., Lockhart, A., Serhal, K., Kellner, V., Maicher, A., Jolivet, P., Teixeira, M.T. and Luke, B. (2017) Telomere Length Determines TERRA and R-Loop Regulation through the Cell Cycle. Cell, 170, 72-85 e14.

45.       Gütle, D.D., Roret, T., Muller, S.J., Couturier, J., Lemaire, S.D., Hecker, A., Dhalleine, T., Buchanan, B.B., Reski, R., Einsle, O. et al. (2016) Chloroplast FBPase and SBPase are thioredoxin-linked enzymes with similar architecture but different evolutionary histories. Proc Natl Acad Sci U S A, 113, 6779-6784.

46.       Hamdane, D., Bou-Nader, C., Cornu, D., Hui-Bon-Hoa, G. and Fontecave, M. (2015) Flavin-Protein Complexes: Aromatic Stacking Assisted by a Hydrogen Bond. Biochemistry, 54, 4354-4364.

47.       Hamdane, D., Bruch, E., Un, S., Field, M. and Fontecave, M. (2013) Activation of a unique flavin-dependent tRNA-methylating agent. Biochemistry, 52, 8949-8956.

48.       Hamdane, D., Grosjean, H. and Fontecave, M. (2016) Flavin-Dependent Methylation of RNAs: Complex Chemistry for a Simple Modification. J Mol Biol, 428, 4867-4881.

49.       Hamdane, D., Guelorget, A., Guerineau, V. and Golinelli-Pimpaneau, B. (2014) Dynamics of RNA modification by a multi-site-specific tRNA methyltransferase. Nucleic Acids Res, 42, 11697-11706.

50.       Hamdane, D., Velours, C., Cornu, D., Nicaise, M., Lombard, M. and Fontecave, M. (2016) A chemical chaperone induces inhomogeneous conformational changes in flexible proteins. Phys Chem Chem Phys, 18, 20410-20421.

51.       Hamouche, L., Laalami, S., Daerr, A., Song, S., Holland, I.B., Seror, S.J., Hamze, K. and Putzer, H. (2017) Bacillus subtilis Swarmer Cells Lead the Swarm, Multiply, and Generate a Trail of Quiescent Descendants. MBio, 8.

52.       Harigua-Souiai, E., Abdelkrim, Y.Z., Bassoumi-Jamoussi, I., Zakraoui, O., Bouvier, G., Essafi-Benkhadir, K., Banroques, J., Desdouits, N., Munier-Lehmann, H., Barhoumi, M. et al. (2018) Identification of novel leishmanicidal molecules by virtual and biochemical screenings targeting Leishmania eukaryotic translation initiation factor 4A. PLoS Negl Trop Dis, 12, e0006160.

53.       Hotto, A.M., Castandet, B., Gilet, L., Higdon, A., Condon, C. and Stern, D.B. (2015) Arabidopsis Chloroplast Mini-Ribonuclease III Participates in rRNA Maturation and Intron Recycling. Plant Cell, 27, 724-740.

54.       Indrisiunaite, G., Pavlov, M.Y., Heurgue-Hamard, V. and Ehrenberg, M. (2015) On the pH dependence of class-1 RF-dependent termination of mRNA translation. J Mol Biol, 427, 1848-1860.

55.       Jagodnik, J., Brosse, A., Le Lam, T.N., Chiaruttini, C. and Guillier, M. (2017) Mechanistic study of base-pairing small regulatory RNAs in bacteria. Methods, 117, 67-76.

56.       Jagodnik, J., Chiaruttini, C. and Guillier, M. (2017) Stem-Loop Structures within mRNA Coding Sequences Activate Translation Initiation and Mediate Control by Small Regulatory RNAs. Mol Cell, 68, 158-170 e153.

57.       Jagodnik, J., Thieffrey, D. and Guillier, M. (2017) In de Bruijn, F. J. (ed.), Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria. John Wiley & Sons, Inc., Hoboken, NJ, USA.

58.       Jalal, A., Schwarz, C., Schmitz-Linneweber, C., Vallon, O., Nickelsen, J. and Bohne, A.V. (2015) A small multifunctional pentatricopeptide repeat protein in the chloroplast of Chlamydomonas reinhardtii. Mol Plant, 8, 412-426.

59.       Jamalli, A., Hebert, A., Zig, L. and Putzer, H. (2014) Control of expression of the RNases J1 and J2 in Bacillus subtilis. J Bacteriol, 196, 318-324.

60.       Kim, R., Kanamaru, S., Mikawa, T., Prévost, C., Ishii, K., Ito, K., Uchiyama, S., Oda, M., Iwasaki, H., Kim, S.K. et al. (2018) RecA requires two molecules of Mg2+ ions for its optimal strand exchange activity in vitro. Nucleic Acids Research, 46, 2548-2559.

61.       Laalami, S., Zig, L. and Putzer, H. (2014) Initiation of mRNA decay in bacteria. Cell Mol Life Sci, 71, 1799-1828.

62.       Leroy, M., Piton, J., Gilet, L., Pellegrini, O., Proux, C., Coppee, J.Y., Figaro, S. and Condon, C. (2017) Rae1/YacP, a new endoribonuclease involved in ribosome-dependent mRNA decay in Bacillus subtilis. EMBO J, 36, 1167-1181.

63.       Letoquart, J., Huvelle, E., Wacheul, L., Bourgeois, G., Zorbas, C., Graille, M., Heurgue-Hamard, V. and Lafontaine, D.L. (2014) Structural and functional studies of Bud23-Trm112 reveal 18S rRNA N7-G1575 methylation occurs on late 40S precursor ribosomes. Proc Natl Acad Sci U S A, 111, E5518-5526.

64.       Liponska, A., Jamalli, A., Kuras, R., Suay, L., Garbe, E., Wollman, F.A., Laalami, S. and Putzer, H. (2018) Tracking the elusive 5' exonuclease activity of Chlamydomonas reinhardtii RNase J. Plant Mol Biol, 96, 641-653.

65.       Ma, M., Li de la Sierra-Gallay, I., Lazar, N., Pellegrini, O., Durand, D., Marchfelder, A., Condon, C. and van Tilbeurgh, H. (2017) The crystal structure of Trz1, the long form RNase Z from yeast. Nucleic Acids Res, 45, 6209-6216.

66.       Ma, M., Li de la Sierra-Gallay, I., Lazar, N., Pellegrini, O., Lepault, J., Condon, C., Durand, D. and van Tilbeurgh, H. (2017) Trz1, the long form RNase Z from yeast, forms a stable heterohexamer with endonuclease Nuc1 and mutarotase. Biochem J, 474, 3599-3613.

67.       Maes, A., Gracia, C., Innocenti, N., Zhang, K., Aurell, E. and Hajnsdorf, E. (2017) Landscape of RNA polyadenylation in E. coli. Nucleic Acids Res, 45, 2746-2756.

68.       Maes, A., Martinez, X., Druart, K., Laurent, B., Guegan, S., Marchand, C.H., Lemaire, S.D. and Baaden, M. (2018) MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis. J Integr Bioinform, 15.

69.       Maikova, A., Peltier, J., Boudry, P., Hajnsdorf, E., Kint, N., Monot, M., Poquet, I., Martin-Verstraete, I., Dupuy, B. and Soutourina, O. (2018) Discovery of new type I toxin-antitoxin systems adjacent to CRISPR arrays in Clostridium difficile. Nucleic Acids Res.

70.       Mazur, A.K. (2016) Homologous Pairing between Long DNA Double Helices. Phys Rev Lett, 116, 158101.

71.       Mazur, A.K. (2017) Weak nanoscale chaos and anomalous relaxation in DNA. Phys Rev E, 95, 062417.

72.       Mazur, A.K. and Shepelyansky, D.L. (2015) Algebraic Statistics of Poincare Recurrences in a DNA Molecule. Phys Rev Lett, 115, 188104.

73.       Mazzanti, L., Doutreligne, S., Gageat, C., Derreumaux, P., Taly, A., Baaden, M. and Pasquali, S. (2017) What Can Human-Guided Simulations Bring to RNA Folding? Biophys J, 113, 302-312.

74.       Morisse, S., Michelet, L., Bedhomme, M., Marchand, C.H., Calvaresi, M., Trost, P., Fermani, S., Zaffagnini, M. and Lemaire, S.D. (2014) Thioredoxin-dependent redox regulation of chloroplastic phosphoglycerate kinase from Chlamydomonas reinhardtii. J Biol Chem, 289, 30012-30024.

75.       Morisse, S., Zaffagnini, M., Gao, X.H., Lemaire, S.D. and Marchand, C.H. (2014) Insight into protein S-nitrosylation in Chlamydomonas reinhardtii. Antioxid Redox Signal, 21, 1271-1284.

76.       Mouhand, A., Belfetmi, A., Catala, M., Larue, V., Zargarian, L., Brachet, F., Gorelick, R.J., Van Heijenoort, C., Mirambeau, G., Barraud, P. et al. (2018) Modulation of the HIV nucleocapsid dynamics finely tunes its RNA-binding properties during virion genesis. Nucleic Acids Res.

77.       Perez-Perez, M.E., Mauries, A., Maes, A., Tourasse, N.J., Hamon, M., Lemaire, S.D. and Marchand, C.H. (2017) The Deep Thioredoxome in Chlamydomonas reinhardtii: New Insights into Redox Regulation. Mol Plant, 10, 1107-1125.

78.       Plumbridge, J. (2015) Regulation of the Utilization of Amino Sugars by Escherichia coli and Bacillus subtilis: Same Genes, Different Control. J Mol Microbiol Biotechnol, 25, 154-167.

79.       Plumbridge, J., Bossi, L., Oberto, J., Wade, J.T. and Figueroa-Bossi, N. (2014) Interplay of transcriptional and small RNA-dependent control mechanisms regulates chitosugar uptake in Escherichia coli and Salmonella. Mol Microbiol, 92, 648-658.

80.       Raj-Kumar, P.K., Vallon, O. and Liang, C. (2017) In silico analysis of the sequence features responsible for alternatively spliced introns in the model green alga Chlamydomonas reinhardtii. Plant Mol Biol, 94, 253-265.

81.       Ruiz-Larrabeiti, O., Plagaro, A.H., Gracia, C., Sevillano, E., Gallego, L., Hajnsdorf, E. and Kaberdin, V.R. (2016) A new custom microarray for sRNA profiling in Escherichia coli. FEMS Microbiol Lett, 363.

82.       Salinas-Giege, T., Cavaiuolo, M., Cognat, V., Ubrig, E., Remacle, C., Duchene, A.M., Vallon, O. and Marechal-Drouard, L. (2017) Polycytidylation of mitochondrial mRNAs in Chlamydomonas reinhardtii. Nucleic Acids Res, 45, 12963-12973.

83.       Senissar, M., Le Saux, A., Belgareh-Touze, N., Adam, C., Banroques, J. and Tanner, N.K. (2014) The DEAD-box helicase Ded1 from yeast is an mRNP cap-associated protein that shuttles between the cytoplasm and nucleus. Nucleic Acids Res, 42, 10005-10022.

84.       Sinturel, F., Navickas, A., Wery, M., Descrimes, M., Morillon, A., Torchet, C. and Benard, L. (2015) Cytoplasmic Control of Sense-Antisense mRNA Pairs. Cell Rep, 12, 1853-1864.

85.       Soudet, J., Jolivet, P. and Teixeira, M.T. (2014) Elucidation of the DNA End-Replication Problem in Saccharomyces cerevisiae. Mol Cell, 53, 954-964.

86.       Stadlbauer, P., Mazzanti, L., Cragnolini, T., Wales, D.J., Derreumaux, P., Pasquali, S. and Sponer, J. (2016) Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes. J Chem Theory Comput, 12, 6077-6097.

87.       Sterpone, F., Doutreligne, S., Tran, T.T., Melchionna, S., Baaden, M., Nguyen, P.H. and Derreumaux, P. (2018) Multi-scale simulations of biological systems using the OPEP coarse-grained model. Biochem Biophys Res Commun, 498, 296-304.

88.       Sterpone, F., Melchionna, S., Tuffery, P., Pasquali, S., Mousseau, N., Cragnolini, T., Chebaro, Y., St-Pierre, J.F., Kalimeri, M., Barducci, A. et al. (2014) The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems. Chem Soc Rev, 43, 4871-4893.

89.       Tourasse, N.J., Barbi, T., Waterhouse, J.C., Shtaida, N., Leu, S., Boussiba, S., Purton, S. and Vallon, O. (2016) The complete sequence of the chloroplast genome of the green microalga Lobosphaera (Parietochloris) incisa. Mitochondrial DNA A DNA Mapp Seq Anal, 27, 2073-2075.

90.       Tourasse, N.J., Choquet, Y. and Vallon, O. (2013) PPR proteins of green algae. RNA Biol, 10, 1526-1542.

91.       Tourasse, N.J., Shtaida, N., Khozin-Goldberg, I., Boussiba, S. and Vallon, O. (2015) The complete mitochondrial genome sequence of the green microalga Lobosphaera (Parietochloris) incisa reveals a new type of palindromic repetitive repeat. BMC Genomics, 16, 580.

92.       Vakirlis, N., Hebert, A.S., Opulente, D.A., Achaz, G., Hittinger, C.T., Fischer, G., Coon, J.J. and Lafontaine, I. (2018) A Molecular Portrait of De Novo Genes in Yeasts. Mol Biol Evol, 35, 631-645.

93.       Wang, F., Johnson, X., Cavaiuolo, M., Bohne, A.V., Nickelsen, J. and Vallon, O. (2015) Two Chlamydomonas OPR proteins stabilize chloroplast mRNAs encoding small subunits of photosystem II and cytochrome b6 f. Plant J, 82, 861-873.

94.       Wang, Y.J., Rico-Lastres, P., Lezamiz, A., Mora, M., Solsona, C., Stirnemann, G. and Garcia-Manyes, S. (2018) DNA Binding Induces a Nanomechanical Switch in the RRM1 Domain of TDP-43. J Phys Chem Lett, 9, 3800-3807.

95.       Wollman, F.A. (2016) An antimicrobial origin of transit peptides accounts for early endosymbiotic events. Traffic, 17, 1322-1328.

96.       Xu, Z., Fallet, E., Paoletti, C., Fehrmann, S., Charvin, G. and Teixeira, M.T. (2015) Two routes to senescence revealed by real-time analysis of telomerase-negative single lineages. Nat Commun, 6, 7680.

97.       Yang, D., Boyer, B., Prevost, C., Danilowicz, C. and Prentiss, M. (2015) Integrating multi-scale data on homologous recombination into a new recognition mechanism based on simulations of the RecA-ssDNA/dsDNA structure. Nucleic Acids Res, 43, 10251-10263.

98.       Zaffagnini, M., De Mia, M., Morisse, S., Di Giacinto, N., Marchand, C.H., Maes, A., Lemaire, S.D. and Trost, P. (2016) Protein S-nitrosylation in photosynthetic organisms: A comprehensive overview with future perspectives. Biochimica Et Biophysica Acta-Proteins and Proteomics, 1864, 952-966.

99.       Zaffagnini, M., Fermani, S., Costa, A., Lemaire, S.D. and Trost, P. (2013) Plant cytoplasmic GAPDH: redox post-translational modifications and moonlighting properties. Front Plant Sci, 4, 450.

100.     Zaffagnini, M., Michelet, L., Sciabolini, C., Di Giacinto, N., Morisse, S., Marchand, C.H., Trost, P., Fermani, S. and Lemaire, S.D. (2014) High-resolution crystal structure and redox properties of chloroplastic triosephosphate isomerase from Chlamydomonas reinhardtii. Mol Plant, 7, 101-120.

101.     Zaffagnini, M., Morisse, S., Bedhomme, M., Marchand, C.H., Festa, M., Rouhier, N., Lemaire, S.D. and Trost, P. (2013) Mechanisms of nitrosylation and denitrosylation of cytoplasmic glyceraldehyde-3-phosphate dehydrogenase from Arabidopsis thaliana. J Biol Chem, 288, 22777-22789.

102.     Zhan, Y., Marchand, C.H., Maes, A., Mauries, A., Sun, Y., Dhaliwal, J.S., Uniacke, J., Arragain, S., Jiang, H., Gold, N.D. et al. (2018) Pyrenoid functions revealed by proteomics in Chlamydomonas reinhardtii. PLoS One, 13, e0185039.

103.     Zorin, B., Grundman, O., Khozin-Goldberg, I., Leu, S., Shapira, M., Kaye, Y., Tourasse, N., Vallon, O. and Boussiba, S. (2014) Development of a nuclear transformation system for Oleaginous Green Alga Lobosphaera (Parietochloris) incisa and genetic complementation of a mutant strain, deficient in arachidonic acid biosynthesis. PLoS One, 9, e105223.

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